Stem-loop sbi-MIR169o

Accession

MI0013253

Description

Sorghum bicolor sbi-MIR169o precursor miRNA

Literature search

5 open access papers mention sbi-MIR169o
(27 sentences)

Sequence

8909 reads, 474.0 reads per million, 45 experiments

aUAGCCAAGGAUGAUUUGCCUGuagcaaccucugagugcuccugcugccauggcagucaggagcgccaagugggugcuucuccGGGCAAAUCAUCUGGGCUAG
.(((((..((((((((((((((.((((.((.((..(((((((((((((....)))).)))))))))..)).)).))))....)))))))))))))).))))).

Structure

a     AA              ---u    a  u  ga         -    c 
 UAGCC  GGAUGAUUUGCCUG    agca cc cu  gugcuccug cugc a
 |||||  ||||||||||||||    |||| || ||  ||||||||| ||||  
 AUCGG  UCUACUAAACGGGc    ucgu gg ga  cgcgaggac gacg u
G     -G              cucu    g  u  ac         u    g 

Annotation confidence High

Genome context

chr1: 1019419-1019521 [-]

Mature sbi-miR169o-5p

• Accession: MIMAT0014042
• Description: Sorghum bicolor sbi-miR169o-5p mature miRNA
• Sequence: 2 - UAGCCAAGGAUGAUUUGCCUG - 22
• Evidence: not_experimental

Mature sbi-miR169o-3p

• Accession: MIMAT0056447
• Description: Sorghum bicolor sbi-miR169o-3p mature miRNA
• Sequence: 84 - GGGCAAAUCAUCUGGGCUAG - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716