Accession
MI0001143
Description
Oryza sativa
osa-MIR166h precursor miRNA
Gene family
MIPF0000004;
MIR166
Literature search
71 open access papers mention osa-MIR166h
(284 sentences)
(284 sentences)
Sequence
25725
reads,
17849
reads per million, 2 experiments
gguggcuuguggGGAAUGUUGGCUGGCUCGAGGuauccacaucuuaauuccucuccggcgaucgagccggcucgggcguguggaagcgUCGGACCAGGCUUCAUUCCUCgcaagccgau
..((((((((((((((((..(.((((.((((.((.(((((((......(((...(((((......)))))...))).))))))).)).)))).)))).)..))))))))))))))))..
..((((((((((((((((..(.((((.((((.((.(((((((......(((...(((((......)))))...))).))))))).)).)))).)))).)..))))))))))))))))..
Structure
gg UU G C G a cuuaau ucu ga uggcuuguggGGAAUG G CUGG UCGA Gu uccacau ucc ccggc u |||||||||||||||| | |||| |||| || ||||||| ||| ||||| gccgaacgCUCCUUAC C GACC GGCU cg aggugug ggg ggccg c ua UU G A g a -----c cuc ag
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR166 family [1]. It is predicted to target mRNAs coding for HD-Zip transcription factors.
Genome context
Chr2: 32435174-32435292 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR166h
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR166h-3p
| Accession | MIMAT0001073 |
| Description | Oryza sativa osa-miR166h-3p mature miRNA |
| Sequence | 89 - UCGGACCAGGCUUCAUUCCUC - 109 |
| Evidence | not_experimental |
| Database links |
|
Mature osa-miR166h-5p
| Accession | MIMAT0022882 |
| Description | Oryza sativa osa-miR166h-5p mature miRNA |
| Sequence | 13 - GGAAUGUUGGCUGGCUCGAGG - 33 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
References
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