Stem-loop osa-MIR166a

Accession

MI0000670

Description

Oryza sativa osa-MIR166a precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

75 open access papers mention osa-MIR166a
(303 sentences)

Sequence

27827 reads, 19323 reads per million, 2 experiments

ugaagcuauuugcuucugaguGGAAUGUUGUCUGGUUCAAGGucucaugcaccuugcgguuuugaggaugauuugugcaagguuuuucauuccucucauccgugggaucUCGGACCAGGCUUCAUUCCCCucagagauagcuuca
((((((((((....((((((.((((((..(((((((((.((((((((((((...)))((....((((((((...............))).)))))....))))))))))).)))))))))..)))))).))))))))))))))))

Structure

          ugcu      u      UU         A         gcaccuugc  uuuu     -   uuugug 
ugaagcuauu    ucugag GGAAUG  GUCUGGUUC AGGucucau         gg    gagga uga      c
||||||||||    |||||| ||||||  ||||||||| |||||||||         ||    ||||| |||      a
acuucgauag    agacuC CCUUAC  CGGACCAGG Ucuagggug         cc    cuccu acu      a
          ----      C      UU         C         ---------  uacu     u   uuuugg 

Annotation confidence High

Genome context

Chr10: 19987135-19987279 [+]

Mature osa-miR166a-3p

• Accession: MIMAT0000635
• Description: Oryza sativa osa-miR166a-3p mature miRNA
• Sequence: 110 - UCGGACCAGGCUUCAUUCCCC - 130
• Evidence: not_experimental

Mature osa-miR166a-5p

• Accession: MIMAT0022855
• Description: Oryza sativa osa-miR166a-5p mature miRNA
• Sequence: 22 - GGAAUGUUGUCUGGUUCAAGG - 42
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176