Stem-loop osa-MIR169f

Accession

MI0001121

Description

Oryza sativa osa-MIR169f precursor miRNA

Literature search

63 open access papers mention osa-MIR169f
(318 sentences)

Sequence

118265 reads, 727.0 reads per million, 142 experiments

gggccuuccaUGAGGACAAGAGCUGAUUCGGUAGCCAAGGAUGACUUGCCUaaugccuaugugcauguguuuauacgcugcucaucugcauuuugauuauccccugaucaguccugucgucaauuauauguguguguaguacucuguacucauacauauauagGCAUGUCUUCCUUGGCUAUUCGGAGCGGCUCUUGUCUCUCGUGgaaggcug
.((((((((((((((((((((((((.(((((((((((((((.(((.((((.(((((..(((.(((.((((....))))))).)))..)))))(((((((.....))))))).............((((((((((((.(((((...))))))))))))))))))))).))).)))))))))).))))).))))))))))).))))))))))))).

Structure

g             -           A     -          U   U    Uaaugccuaugugcauguguuuauacgcugcucaucugcauuuugauuauccccugaucaguccugucgucaau            u     u 
 ggccuuccaUGAG GACAAGAGCUG UUCGG UAGCCAAGGA GAC UGCC                                                                          uauaugugugug aguac  
 ||||||||||||| ||||||||||| ||||| |||||||||| ||| ||||                                                                          |||||||||||| ||||| c
 ucggaagGUGCUC CUGUUCUCGGC AGGCU AUCGGUUCCU CUG ACGg                                                                          auauauacauac ucaug  
g             U           G     U          U   U    --------------------------------------------------------------------------            -     u 

Annotation confidence High

Genome context

2: 18558299-18558512 [-]

Mature osa-miR169f-5p.1

• Accession: MIMAT0001051
• Description: Oryza sativa osa-miR169f-5p.1 mature miRNA
• Sequence: 32 - UAGCCAAGGAUGACUUGCCU - 51
• Evidence: experimental

Mature osa-miR169f-5p.2

• Accession: MIMAT0020916
• Description: Oryza sativa osa-miR169f-5p.2 mature miRNA
• Sequence: 11 - UGAGGACAAGAGCUGAUUCGG - 31
• Evidence: experimental ; Illumina [2]

Mature osa-miR169f-3p.1

• Accession: MIMAT0060830
• Description: Oryza sativa osa-miR169f-3p.1 mature miRNA
• Sequence: 164 - GCAUGUCUUCCUUGGCUAUUC - 184
• Evidence: experimental ; Illumina [1]

Mature osa-miR169f-3p.2

• Accession: MIMAT0060831
• Description: Oryza sativa osa-miR169f-3p.2 mature miRNA
• Sequence: 185 - GGAGCGGCUCUUGUCUCUCGUG - 206
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53