Stem-loop osa-MIR169i

Accession

MI0001124

Description

Oryza sativa osa-MIR169i precursor miRNA

Literature search

62 open access papers mention osa-MIR169i
(323 sentences)

Sequence

339639 reads, 2558.0 reads per million, 142 experiments

ggaagagagcaaggcuugcaUGGUGAUAAGGGUGUAGCUCUGGUAGCCAAGGAUGACUUGCCUGUGuccuuguguagaggaucauucagaaaaugagccuugaacugguucauaGGCAGUCUCCUUGGCUAGUcUGAGUCGCUCUUAUCACUCAUGuuaggcuugcaucucguuga
....(((((((((.((.(((((((((((((((((..((((.((((((((((((.((((.(((((((..((.((...((((.(((((.....))))).))))..)).))..))))))))))))))))))))).)).)))))))))))))))).))))).)).))))).)))).....

Structure

-ggaa    -     g  u     -            UA    U  -          U    U       uc  u  gua    a     c 
     gaga gcaag cu gcaUG GUGAUAAGGGUG  GCUC GG UAGCCAAGGA GACU GCCUGUG  cu gu   gagg ucauu a
     |||| ||||| || ||||| ||||||||||||  |||| || |||||||||| |||| |||||||  || ||   |||| ||||| g
     cucu cguuc ga uGUAC CACUAUUCUCGC  UGAG cU AUCGGUUCCU CUGA CGGauac  gg ca   uucc aguaa a
aguug    a     g  u     U            --    U  G          -    -       uu  u  -ag    g     a 

Annotation confidence High

Genome context

8: 26803116-26803291 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR169i

Mature osa-miR169i-5p.1

• Accession: MIMAT0001054
• Description: Oryza sativa osa-miR169i-5p.1 mature miRNA
• Sequence: 44 - UAGCCAAGGAUGACUUGCCUGUG - 66
• Evidence: experimental

Mature osa-miR169i-5p.2

• Accession: MIMAT0020917
• Description: Oryza sativa osa-miR169i-5p.2 mature miRNA
• Sequence: 21 - UGGUGAUAAGGGUGUAGCUCUGG - 43
• Evidence: experimental ; Illumina [2]

Mature osa-miR169i-3p.1

• Accession: MIMAT0022876
• Description: Oryza sativa osa-miR169i-3p.1 mature miRNA
• Sequence: 115 - GGCAGUCUCCUUGGCUAGU - 133
• Evidence: experimental ; Illumina [3]

Mature osa-miR169i-3p.2

• Accession: MIMAT0060832
• Description: Oryza sativa osa-miR169i-3p.2 mature miRNA
• Sequence: 135 - UGAGUCGCUCUUAUCACUCAUG - 156
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53


3. PubMed ID: 22585409
   Novel miRNAs in the control of arsenite levels in rice
   "Liu Q"
   "Funct Integr Genomics (2012) 12:649-658