Stem-loop osa-MIR156e

Accession

MI0000657

Description

Oryza sativa osa-MIR156e precursor miRNA

Literature search

118 open access papers mention osa-MIR156e
(648 sentences)

Sequence

7736559 reads, 29759.0 reads per million, 142 experiments

ggcgcgaggUGACAGAAGAGAGUGAGCACacggccgggcgugacggcaccggcgggcgugccgucgcggccgcguGCUCACUGCUCUUUCUGUCAUCcggugcc
(((((..((((((((((((((((((((((.(((((....(((((((((((.....).))))))))))))))).))))))))).))).))))))))))..)))))

Structure

     ga          -   -         a     gggc          - g 
ggcgc  ggUGACAGAA GAG AGUGAGCAC cggcc    gugacggcac c g
|||||  |||||||||| ||| ||||||||| |||||    |||||||||| | c
ccgug  CUACUGUCUU CUC UCACUCGug gccgg    cgcugccgug g g
     gc          U   G         c     ----          c g 

Annotation confidence High

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

4: 25026327-25026430 [-]

Mature osa-miR156e-5p

• Accession: MIMAT0000622
• Description: Oryza sativa osa-miR156e-5p mature miRNA
• Sequence: 10 - UGACAGAAGAGAGUGAGCAC - 29
• Evidence: not_experimental

Mature osa-miR156e-3p

• Accession: MIMAT0055906
• Description: Oryza sativa osa-miR156e-3p mature miRNA
• Sequence: 76 - GCUCACUGCUCUUUCUGUCAUC - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626