Stem-loop osa-MIR159f

Accession

MI0001097

Description

Oryza sativa osa-MIR159f precursor miRNA

Literature search

79 open access papers mention osa-MIR159f
(343 sentences)

Sequence

3602358 reads, 8243.0 reads per million, 142 experiments

gaagaagaagacgAGCUCCCUUCGAUCCAAUCCaggagaggaagugguaggaugcagcugccgguucauggauaccucugcagugcaugucguaggcuugcacuugcauggguuugcaugacccgggagaugaacccaccauugucuuccucuuaugCUUGGAUUGAAGGGAGCUCUAcaccucucuc
..(((((..(..((((((((((((((((((..((.(((((((((((((.((...((.((.((((.(((((.(.((((.(((((((((.(((...))).))))).)))).)))).).))))).)))).)).))...))))))....))))))))).)).))))))))))))))))))..)..)).))).

Structure

ga   -  aa ac                  UC  g         ----    a  aug  g  g    u     g u    c    -     u   g 
  aga ag  g  gAGCUCCCUUCGAUCCAA  Ca gagaggaag    uggu gg   ca cu ccgg ucaug a accu ugca gugca guc  
  ||| ||  |  ||||||||||||||||||  || |||||||||    |||| ||   || || |||| ||||| | |||| |||| ||||| ||| u
  ucu uc  c  CUCGAGGGAAGUUAGGUU  gu uucuccuuc    acca cc   gu ga ggcc aguac u uggg acgu cacgu cgg  
-c   c  ca AU                  -C  a         uguu    -  caa  a  g    c     g u    u    u     u   a 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context

1: 6693112-6693299 [+]

Mature osa-miR159f-5p

• Accession: MIMAT0055949
• Description: Oryza sativa osa-miR159f-5p mature miRNA
• Sequence: 14 - AGCUCCCUUCGAUCCAAUCC - 33
• Evidence: experimental ; unknown

Mature osa-miR159f-3p

• Accession: MIMAT0001027
• Description: Oryza sativa osa-miR159f-3p mature miRNA
• Sequence: 158 - CUUGGAUUGAAGGGAGCUCUA - 178
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799