Accession
MI0001091
Description
Oryza sativa
osa-MIR156l precursor miRNA
Literature search
123 open access papers mention osa-MIR156l
(664 sentences)
(664 sentences)
Sequence
185511
reads,
1091.0
reads per million, 142 experiments
gcuagggagcCGACAGAAGAGAGUGAGCAUauauaguucuuuccuugcauauguggucauauguguguugacugaagagauacauauauauagagagagagaguucaugugcuugaagcuauauguGCUCACUUCUCUUUCUGUCAGCaaauuauc
........((.((((((((((((((((((((((((((...(((...(((((((.(.(((((((((((((.........)))))))))))...........)).).)))))))..)))))))))))))))))).)))).))))))).))........
........((.((((((((((((((((((((((((((...(((...(((((((.(.(((((((((((((.........)))))))))))...........)).).)))))))..)))))))))))))))))).)))).))))))).))........
Structure
gcuaggga C - - ucu cuu u g ----------- gac
gc GACAGAA GAGA GUGAGCAUauauagu uuc gcauaug g uc auauguguguu u
|| ||||||| |||| ||||||||||||||| ||| ||||||| | || ||||||||||| g
CG CUGUCUU CUCU CACUCGuguauaucg aag cguguac u ag uauauacauag a
cuauuaaa A U U --- -uu u g agagagagaua aga
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR156 family [1]. It is predicted to target mRNAs coding for Squamosa-promoter Binding Protein (SBP)-like transcription factors.
Genome context
5: 5230609-5230764 [+]
Database links
Mature osa-miR156l-5p
| Accession | MIMAT0001021 |
| Description | Oryza sativa osa-miR156l-5p mature miRNA |
| Sequence | 11 - CGACAGAAGAGAGUGAGCAU - 30 |
| Evidence | not_experimental |
| Database links |
|
Mature osa-miR156l-3p
| Accession | MIMAT0022866 |
| Description | Oryza sativa osa-miR156l-3p mature miRNA |
| Sequence | 127 - GCUCACUUCUCUUUCUGUCAGC - 148 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
References
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