Stem-loop osa-MIR395n

Accession

MI0005085

Description

Oryza sativa osa-MIR395n precursor miRNA

Literature search

41 open access papers mention osa-MIR395n
(165 sentences)

Sequence

52033 reads, 242.0 reads per million, 142 experiments

gaGUUCCCUUCAAGCACUUCACGacgcacuauuuagagaguuguuGUGAAGUGUUUGGGGGAACUC
(((((((((.((((((((((((((((.(((........))))))))))))))))))))))))))))

Structure

         U                c   auu 
gaGUUCCCU CAAGCACUUCACGacg acu   u
||||||||| |||||||||||||||| |||    
CUCAAGGGG GUUUGUGAAGUGuugu uga   a
         -                -   gag 

Annotation confidence High

Comments

Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the gene names have been rationalised to reflect this arrangement [1].

Genome context

4: 32622243-32622308 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from osa-MIR395n

Mature osa-miR395n-5p

• Accession: MIMAT0055996
• Description: Oryza sativa osa-miR395n-5p mature miRNA
• Sequence: 3 - GUUCCCUUCAAGCACUUCACG - 23
• Evidence: experimental ; unknown

Mature osa-miR395n-3p

• Accession: MIMAT0003871
• Description: Oryza sativa osa-miR395n-3p mature miRNA
• Sequence: 46 - GUGAAGUGUUUGGGGGAACUC - 66
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638