Stem-loop osa-MIR2055

Accession

MI0010489

Description

Oryza sativa osa-MIR2055 precursor miRNA

Literature search

3 open access papers mention osa-MIR2055
(24 sentences)

Sequence

250056 reads, 881.0 reads per million, 142 experiments

agaagauggaggcaccagcccaaggaaacacagacauugacaCGCAAUUCAAGGAGAAGAUUGCguccuaCUUUUUCCUUGGGAAGGUGGUuucucuucu
((((((.((((.((((..((((((((((...((........((((((((.........))))))))....)).))))))))))..)))).))))))))))

Structure

      u    g    ag          cac  acauugac        CAA 
agaaga ggag cacc  cccaaggaaa   ag        aCGCAAUU   G
|||||| |||| ||||  ||||||||||   ||        ||||||||   G
ucuucu cuuU GUGG  GGGUUCCUUU   UC        ugCGUUAG   A
      -    G    AA          --U  ----aucc        AAG 

Annotation confidence Low

Genome context

9: 431432-431531 [-]

Mature osa-miR2055-5p

• Accession: MIMAT0061479
• Description: Oryza sativa osa-miR2055-5p mature miRNA
• Sequence: 43 - CGCAAUUCAAGGAGAAGAUUGC - 64
• Evidence: experimental ; unknown

Mature sbi-miR821c-5p

• Accession: MIMAT0011387
• Description: Oryza sativa sbi-miR821c-5p mature miRNA
• Sequence: 43 - CGCAAUUCAAGGAGAAGAUUGC - 64
• Evidence: not_experimental

Mature osa-miR2055-3p

• Accession: MIMAT0009980
• Description: Oryza sativa osa-miR2055-3p mature miRNA
• Sequence: 71 - CUUUUUCCUUGGGAAGGUGGU - 91
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 19055717
   Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice
   Lacombe S, Nagasaki H, Santi C, Duval D, Piégu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M
   BMC Plant Biol (2008) 8:123