Stem-loop osa-MIR393a

Accession

MI0001026

Description

Oryza sativa osa-MIR393a precursor miRNA

Literature search

58 open access papers mention osa-MIR393a
(154 sentences)

Sequence

160301 reads, 926.0 reads per million, 142 experiments

uggggaagcaUCCAAAGGGAUCGCAUUGAUCcuucaucgcucucgcucgcuuccauggcggucgucgucuacaagcagcuugacggAUCAUGCGAUCCUUUUGGAGGcuuccucu
.((((((((.((((((((((((((((.(((((.(((..(((((((.(((((.....))))).)).........)).))).))).))))))))))))))))))))).)))))))).

Structure

u        a                U     u   uc   -  ---------  c     u 
 ggggaagc UCCAAAGGGAUCGCAU GAUCc uca  gcu cu         cg ucgcu c
 |||||||| |||||||||||||||| ||||| |||  ||| ||         || ||||| c
 cuccuucG AGGUUUUCCUAGCGUA CUAgg agu  cga ga         gc ggcgg a
u        G                -     c   -u   c  acaucugcu  u     u 

Annotation confidence High

Comments

This sequence belongs to the miR393 family of miRNAs, which are predicted to target mRNAs coding for F-box proteins and bHLH transcription factors [1].

Genome context

1: 2309149-2309263 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR393a

Mature osa-miR393a-5p

• Accession: MIMAT0000957
• Description: Oryza sativa osa-miR393a-5p mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUC - 31
• Evidence: not_experimental

Mature osa-miR393a-3p

• Accession: MIMAT0055915
• Description: Oryza sativa osa-miR393a-3p mature miRNA
• Sequence: 87 - AUCAUGCGAUCCUUUUGGAGG - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799