Stem-loop osa-MIR444c

Accession

MI0006975

Description

Oryza sativa osa-MIR444c precursor miRNA

Literature search

26 open access papers mention osa-MIR444c
(69 sentences)

Sequence

8323746 reads, 41880.0 reads per million, 142 experiments

aguugcugcaaguggaggCGGCAAGCUAGAGACAGCAACUgcauaucuugcaagaaaaucgguuuuauggccauaccgaugauuuucuugcaagcugugcaguUGUUGUCUCAAGCUUGCUGCCucccuuugccagaa
.....(((((((.((((((((((((((.(((((((((((((((((.(((((((((((((((((...........))))))...))))))))))).))))))))))))))))).)))))))))))))).)))).)))..

Structure

aguug   -    u              A                 u           ---      uuua 
     cug caag ggaggCGGCAAGCU GAGACAGCAACUgcaua cuugcaagaaa   aucggu    u
     ||| |||| |||||||||||||| ||||||||||||||||| |||||||||||   ||||||    g
     gac guuu ccuCCGUCGUUCGA CUCUGUUGUugacgugu gaacguucuuu   uagcca    g
---aa   c    c              A                 c           uag      uacc 

Annotation confidence Medium

Genome context

Unknown

Mature osa-miR444c-5p

• Accession: MIMAT0005971
• Description: Oryza sativa osa-miR444c-5p mature miRNA
• Sequence: 19 - CGGCAAGCUAGAGACAGCAACU - 40
• Evidence: experimental ; MPSS [1], Northern [1], cloned [2]

Mature osa-miR444c-3p

• Accession: MIMAT0005970
• Description: Oryza sativa osa-miR444c-3p mature miRNA
• Sequence: 104 - UGUUGUCUCAAGCUUGCUGCC - 124
• Evidence: experimental ; MPSS [1], Northern [1], cloned [2]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25


2. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956