Stem-loop osa-MIR395v

Accession

MI0005090

Description

Oryza sativa osa-MIR395v precursor miRNA

Literature search

40 open access papers mention osa-MIR395v
(163 sentences)

Sequence

200 reads, 2.0 reads per million, 58 experiments

gaauuCUCUUUAAGCACUUCAUACGACACaauuauuucaaggguuguuGUGAAGUAUUUGGCGGAACUC
((.(((.(.(((((.((((((((((((...............)))).)))))))).))))).)))).))

Structure

  a   U U     C        -    ACaauu 
ga uuC C UUAAG ACUUCAUA CGAC      a
|| ||| | ||||| |||||||| ||||      u
CU AAG G GGUUU UGAAGUGu guug      u
  C   - C     A        u    ggaacu 

Annotation confidence Low

Comments

Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the gene names have been rationalised to reflect this arrangement [1].

Genome context

9: 6606575-6606643 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from osa-MIR395v

Mature osa-miR395v-5p

• Accession: MIMAT0055998
• Description: Oryza sativa osa-miR395v-5p mature miRNA
• Sequence: 6 - CUCUUUAAGCACUUCAUACGACAC - 29
• Evidence: experimental ; unknown

Mature osa-miR395v-3p

• Accession: MIMAT0003876
• Description: Oryza sativa osa-miR395v-3p mature miRNA
• Sequence: 49 - GUGAAGUAUUUGGCGGAACUC - 69
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638