Stem-loop osa-MIR395c

Accession

MI0001041

Description

Oryza sativa osa-MIR395c precursor miRNA

Literature search

40 open access papers mention osa-MIR395c
(163 sentences)

Sequence

2506 reads, 12.0 reads per million, 114 experiments

guauuaucaagaguucucuuuaAGCACUUCAUACGACACCAUUAUUuauaggguuguuGUGAAGUGUUUGGAGGAACUCucggugucau
....((((.(((((((.((((((((((((((((((((.((..........)))))).))))))))))))))))))))))).))))....

Structure

guau    a       u                -    A  AUUA 
    uauc agaguuc cuuuaAGCACUUCAUA CGAC CC    U
    |||| ||||||| |||||||||||||||| |||| ||     
    gugg uCUCAAG GAGGUUUGUGAAGUGu guug gg    U
uacu    c       -                u    -  auau 

Annotation confidence Low

Comments

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context

4: 31805193-31805281 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from osa-MIR395c

Mature osa-miR395c-5p

• Accession: MIMAT0055927
• Description: Oryza sativa osa-miR395c-5p mature miRNA
• Sequence: 23 - AGCACUUCAUACGACACCAUUAUU - 46
• Evidence: experimental ; unknown

Mature osa-miR395c-3p

• Accession: MIMAT0000972
• Description: Oryza sativa osa-miR395c-3p mature miRNA
• Sequence: 59 - GUGAAGUGUUUGGAGGAACUC - 79
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638