Stem-loop osa-MIR1428b

Accession

MI0008235

Description

Oryza sativa osa-MIR1428b precursor miRNA

Literature search

5 open access papers mention osa-MIR1428b
(17 sentences)

Sequence

34743 reads, 243.0 reads per million, 130 experiments

gguuagugcgcuuugcgaauucacgggucuUAUCUUGUGGUAUGAACUGaguacguaaugauuuauggugcauauugggggcuuaccaUAAGAUAAUGCCAUGAAUUCGcaaagcguucaaacc
((((.(.((((((((((((((((..(((.(((((((((((((.(..((.(((((((((....))))).....)))).))..).))))))))))))).))).)))))))))))))))).).))))

Structure

    a u                cg   c             U AA  G    -----     u 
gguu g gcgcuuugcgaauuca  ggu uUAUCUUGUGGUA G  CU agua     cguaa g
|||| | ||||||||||||||||  ||| ||||||||||||| |  || ||||     |||||  
ccaa c ugcgaaacGCUUAAGU  CCG AAUAGAAUaccau c  gg uuau     guauu a
    a u                -A   U             u gg  g    acgug     u 

Annotation confidence Low

Genome context

1: 25390346-25390469 [+]

Mature osa-miR1428b-5p

• Accession: MIMAT0056046
• Description: Oryza sativa osa-miR1428b-5p mature miRNA
• Sequence: 31 - UAUCUUGUGGUAUGAACUG - 49
• Evidence: experimental ; unknown

Mature osa-miR1428b-3p

• Accession: MIMAT0007781
• Description: Oryza sativa osa-miR1428b-3p mature miRNA
• Sequence: 89 - UAAGAUAAUGCCAUGAAUUCG - 109
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465