Stem-loop osa-MIR395q

Accession

MI0005088

Description

Oryza sativa osa-MIR395q precursor miRNA

Literature search

40 open access papers mention osa-MIR395q
(163 sentences)

Sequence

50241 reads, 235.0 reads per million, 142 experiments

gaGUUCCCUUCAAGCACUUCACaugacacuauuucaaugucuauuauGUGAAGUGUUUGGGGGAACUC
(((((((((.((((((((((((((((.((.........))...)))))))))))))))))))))))))

Structure

         U                --c  uau 
gaGUUCCCU CAAGCACUUCACauga   ac   u
||||||||| ||||||||||||||||   ||   u
CUCAAGGGG GUUUGUGAAGUGuauu   ug   c
         -                auc  uaa 

Annotation confidence High

Comments

Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the gene names have been rationalised to reflect this arrangement [1].

Genome context

4: 32622668-32622735 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from osa-MIR395q

Mature osa-miR395q-5p

• Accession: MIMAT0055997
• Description: Oryza sativa osa-miR395q-5p mature miRNA
• Sequence: 3 - GUUCCCUUCAAGCACUUCAC - 22
• Evidence: experimental ; unknown

Mature osa-miR395q-3p

• Accession: MIMAT0003874
• Description: Oryza sativa osa-miR395q-3p mature miRNA
• Sequence: 48 - GUGAAGUGUUUGGGGGAACUC - 68
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638