Stem-loop osa-MIR395j

Accession

MI0001034

Description

Oryza sativa osa-MIR395j precursor miRNA

Literature search

40 open access papers mention osa-MIR395j
(164 sentences)

Sequence

59198 reads, 282.0 reads per million, 142 experiments

guguucccaagaGUUCCUUGCAAGCACUUCACAuagaacuucuguuacucucauguaacauugggaacuugagaagcuacuGUGAAGUGUUUGGGGGAACUCuagguggcac
(((((.((.((((((((((.((((((((((((((((..(((((.....(((((........))))).....)))))))).))))))))))))))))))))))).)).)))))

Structure

     c  a          G             -   aa     guuac     ugu 
guguu cc agaGUUCCUU CAAGCACUUCACA uag  cuucu     ucuca   a
||||| || |||||||||| ||||||||||||| |||  |||||     |||||    
cacgg gg uCUCAAGGGG GUUUGUGAAGUGu auc  gaaga     agggu   a
     u  a          -             c   --     guuca     uac 

Annotation confidence High

Comments

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context

8: 3299479-3299590 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from osa-MIR395j

Mature osa-miR395j-5p

• Accession: MIMAT0055923
• Description: Oryza sativa osa-miR395j-5p mature miRNA
• Sequence: 13 - GUUCCUUGCAAGCACUUCACA - 33
• Evidence: experimental ; unknown

Mature osa-miR395j-3p

• Accession: MIMAT0000965
• Description: Oryza sativa osa-miR395j-3p mature miRNA
• Sequence: 82 - GUGAAGUGUUUGGGGGAACUC - 102
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638