Stem-loop osa-MIR164d

Accession

MI0001104

Description

Oryza sativa osa-MIR164d precursor miRNA

Literature search

70 open access papers mention osa-MIR164d
(292 sentences)

Sequence

2349059 reads, 9491.0 reads per million, 142 experiments

caaaccgugcUGGAGAAGCAGGGCACGUGCUcgacggcggggcuggcuggccggccggcuugcagCAUGUGCGCUCCUUCUCCAGCauggcuuc
....((((((((((((((.((.((((((((((((((((.((.(.....).)).))))..))).))))))))).)).))))))))))))))....

Structure

caaa              C  G         -   --    g  g u 
    ccgugcUGGAGAAG AG GCACGUGCU cga  cggc gg c g
    |||||||||||||| || ||||||||| |||  |||| || | g
    gguaCGACCUCUUC UC CGUGUACga guu  gccg cc g c
cuuc              C  G         c   cg    g  g u 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR164 family [1]. It is predicted to target mRNAs coding for NAC domain transcription factors.

Genome context

2: 33143567-33143660 [-]

Mature osa-miR164d-5p

• Accession: MIMAT0001034
• Description: Oryza sativa osa-miR164d-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCU - 31
• Evidence: not_experimental

Mature osa-miR164d-3p

• Accession: MIMAT0055953
• Description: Oryza sativa osa-miR164d-3p mature miRNA
• Sequence: 66 - CAUGUGCGCUCCUUCUCCAGC - 86
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799