Stem-loop osa-MIR395y

Accession

MI0013351

Description

Oryza sativa osa-MIR395y precursor miRNA

Literature search

40 open access papers mention osa-MIR395y
(170 sentences)

Sequence

64656 reads, 300.0 reads per million, 142 experiments

uggccccaggaGUUCCUUGCAAGCACUUCACAuagaacuucaguuacucucauacaacauugugauuuugagaagcuauuGUGAAGUGUUUGGGGGAACUCucggugcca
((((.((.((((((((((.((((((((((((((((...(((((((((..............)))))..))))...))).))))))))))))))))))))))).)).))))

Structure

    c  a          G             -   aac    --     ucucau 
uggc cc ggaGUUCCUU CAAGCACUUCACA uag   uuca  guuac      a
|||| || |||||||||| ||||||||||||| |||   ||||  |||||       
accg gg uCUCAAGGGG GUUUGUGAAGUGu auc   gagu  uagug      c
    u  c          -             u   gaa    uu     uuacaa 

Annotation confidence High

Genome context

8: 3299815-3299924 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from osa-MIR395y

Mature osa-miR395y-5p

• Accession: MIMAT0056161
• Description: Oryza sativa osa-miR395y-5p mature miRNA
• Sequence: 12 - GUUCCUUGCAAGCACUUCACA - 32
• Evidence: experimental ; unknown

Mature osa-miR395y-3p

• Accession: MIMAT0014125
• Description: Oryza sativa osa-miR395y-3p mature miRNA
• Sequence: 81 - GUGAAGUGUUUGGGGGAACUC - 101
• Evidence: not_experimental

References

1. PubMed ID: 19951405
   Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins
   Merchan F, Boualem A, Crespi M, Frugier F
   Genome Biol (2009) 10:R136