Stem-loop osa-MIR164a

Accession

MI0000668

Description

Oryza sativa osa-MIR164a precursor miRNA

Literature search

80 open access papers mention osa-MIR164a
(306 sentences)

Sequence

3795015 reads, 17711.0 reads per million, 142 experiments

gugagaaggaccgcguUGGAGAAGCAGGGCACGUGCAUgcauauguucaucaucaucuucuuccuccuccucuagcuccagccuuguguggguuggaaguuuagauagaacucgcacugCACGUGGUCUCCUUCUCCAUCccggucuuuuucucac
(((((((((((((.(.((((((((.(((.(((((((((((....(((((((......................(((((((((((.....))))))).))))..))).))))..))).)))))))).))).)))))))).).))))))..)))))))

Structure

       --      c u        C   G        -   auau    -   aucaucuucuuccuccuccucu    -       u 
gugagaa  ggaccg g UGGAGAAG AGG CACGUGCA Ugc    guuc auc                      agcu ccagccu g
|||||||  |||||| | |||||||| ||| |||||||| |||    |||| |||                      |||| ||||||| u
cacucuu  ucuggc C ACCUCUUC UCU GUGCACgu acg    caag uag                      uuga gguuggg g
       uu      c U        C   G        c   --cu    a   --------------------au    a       u 

Annotation confidence High

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

7: 28523341-28523496 [-]

Mature osa-miR164a-5p

• Accession: MIMAT0000633
• Description: Oryza sativa osa-miR164a-5p mature miRNA
• Sequence: 17 - UGGAGAAGCAGGGCACGUGCAU - 38
• Evidence: not_experimental

Mature osa-miR164a-3p

• Accession: MIMAT0055909
• Description: Oryza sativa osa-miR164a-3p mature miRNA
• Sequence: 120 - CACGUGGUCUCCUUCUCCAUC - 140
• Evidence: experimental ; unknown

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626