Stem-loop osa-MIR164a

Accession

MI0000668

Description

Oryza sativa osa-MIR164a precursor miRNA

Literature search

73 open access papers mention osa-MIR164a
(320 sentences)

Sequence

2724 reads, 1888 reads per million, 2 experiments

gugagaaggaccgcguUGGAGAAGCAGGGCACGUGCAugcauauguucaucaucaucuucuuccuccuccucuagcuccagccuuguguggguuggaaguuuagauagaacucgcacugcacguggucuccuucuccaucccggucuuuuucucac
(((((((((((((.(.((((((((.(((.(((((((((((....(((((((......................(((((((((((.....))))))).))))..))).))))..))).)))))))).))).)))))))).).))))))..)))))))

Structure

       --      c u        C   G        -   auau    -   aucaucuucuuccuccuccucu    -       u 
gugagaa  ggaccg g UGGAGAAG AGG CACGUGCA ugc    guuc auc                      agcu ccagccu g
|||||||  |||||| | |||||||| ||| |||||||| |||    |||| |||                      |||| ||||||| u
cacucuu  ucuggc c accucuuc ucu gugcacgu acg    caag uag                      uuga gguuggg g
       uu      c u        c   g        c   --cu    a   --------------------au    a       u 

Annotation confidence Not enough data

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

Chr7: 28523341-28523496 [-]

Mature osa-miR164a

• Accession: MIMAT0000633
• Description: Oryza sativa osa-miR164a mature miRNA
• Sequence: 17 - UGGAGAAGCAGGGCACGUGCA - 37
• Evidence: not_experimental

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626