Stem-loop osa-MIR166c

Accession

MI0000672

Description

Oryza sativa osa-MIR166c precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

72 open access papers mention osa-MIR166c
(273 sentences)

Sequence

27571 reads, 19151 reads per million, 2 experiments

ggcaguugaggGGAAUGUUGUCUGGUCCGAGaccuaacaccgggcggaauggcggauucagcugcagcuaagcaagcuaggugggggguuUCGGACCAGGCUUCAUUCCCCccaacucaacuguu
.((((((((((((((((..((((((((((((((((..((((.(((.(..((((.............))))..)..))).))))..))))))))))))))))..)))))))).....)))))))).

Structure

g        -----        UU                aa    g   -g aa    ggauu 
 gcaguuga     ggGGAAUG  GUCUGGUCCGAGaccu  cacc ggc  g  uggc     c
 ||||||||     ||||||||  ||||||||||||||||  |||| |||  |  ||||     a
 ugucaacu     CCCCUUAC  CGGACCAGGCUuuggg  gugg ucg  c  aucg     g
u        caacc        UU                gg    a   aa ga    acguc 

Annotation confidence High

Genome context

Chr3: 3487788-3487912 [+]

Mature osa-miR166c-3p

• Accession: MIMAT0000637
• Description: Oryza sativa osa-miR166c-3p mature miRNA
• Sequence: 91 - UCGGACCAGGCUUCAUUCCCC - 111
• Evidence: not_experimental

Mature osa-miR166c-5p

• Accession: MIMAT0022857
• Description: Oryza sativa osa-miR166c-5p mature miRNA
• Sequence: 12 - GGAAUGUUGUCUGGUCCGAG - 31
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176