Stem-loop osa-MIR156a

Accession

MI0000653

Description

Oryza sativa osa-MIR156a precursor miRNA

Literature search

122 open access papers mention osa-MIR156a
(698 sentences)

Sequence

372282 reads, 257272 reads per million, 2 experiments

ggagggUGACAGAAGAGAGUGAGCACacgugguuguuuccuugcauaaaugaugccuaugcuuggagcuacgcgugcucacuucucucucugucaccucc
(((((.((((((((((((((((((((.((((((....(((..(((((.........)))))..))))))))).)))))))).))))).))))))))))))

Structure

     g       -     -        a      uguu   uu     aau 
ggagg UGACAGA AGAGA GUGAGCAC cguggu    ucc  gcaua   g
||||| ||||||| ||||| |||||||| ||||||    |||  |||||   a
ccucc acugucu ucucu cacucgug gcaucg    agg  cguau   u
     -       c     u        c      ----   uu     ccg 

Annotation confidence Not enough data

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

Chr1: 22524147-22524246 [-]

Mature osa-miR156a

• Accession: MIMAT0000618
• Description: Oryza sativa osa-miR156a mature miRNA
• Sequence: 7 - UGACAGAAGAGAGUGAGCAC - 26
• Evidence: not_experimental

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626