Stem-loop osa-MIR166j

Accession

MI0001158

Description

Oryza sativa osa-MIR166j precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

70 open access papers mention osa-MIR166j
(263 sentences)

Sequence

28079 reads, 19511 reads per million, 2 experiments

ugauccauggcuguugagagGAAUGACGUCCGGUCUGAAGAucgccguccccaggcgguggcuUCGGACCAGGCUUCAUUCCCCaugacucauggaaccc
...(((((((..((((.(.(((((((.(((.(((((((((.((((((((....))))))))))))))))).))).))))))).).)))))))))))....

Structure

-uga       cu    a a       C   C         A        c 
    uccaugg  guug g gGAAUGA GUC GGUCUGAAG ucgccguc c
    |||||||  |||| | ||||||| ||| ||||||||| ||||||||  
    agguacu  cagu C CCUUACU CGG CCAGGCUuc gguggcgg c
ccca       --    a C       U   A         -        a 

Annotation confidence Not enough data

Genome context

Unknown

Mature osa-miR166j-3p

• Accession: MIMAT0001088
• Description: Oryza sativa osa-miR166j-3p mature miRNA
• Sequence: 64 - UCGGACCAGGCUUCAUUCCCC - 84
• Evidence: not_experimental

Mature osa-miR166j-5p

• Accession: MIMAT0022887
• Description: Oryza sativa osa-miR166j-5p mature miRNA
• Sequence: 21 - GAAUGACGUCCGGUCUGAAGA - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15685364
   Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
   "Li Y, Li W, Jin YX"
   "Acta Biochim Biophys Sin (Shanghai) (2005) 37:75-87


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176