Stem-loop osa-MIR395u

Accession

MI0001044

Description

Oryza sativa osa-MIR395u precursor miRNA

Literature search

40 open access papers mention osa-MIR395u
(163 sentences)

Sequence

449 reads, 3.0 reads per million, 54 experiments

aCACUGCCAGGAAUUCCCUUCAAGCAauucaugaaacaauauuuugagaguuguuGUGAAGCGUUUGGGGGAAAUCUCAgugucgc
((((((...(((.((((((.(((((..(((((..((((((.........)))))))))))..))))))))))).)))))))))...

Structure

---      CCA   A      U     Aa     ga      auu 
   aCACUG   GGA UUCCCU CAAGC  uucau  aacaau   u
   ||||||   ||| |||||| |||||  |||||  ||||||   u
   ugugAC   UCU AAGGGG GUUUG  AAGUG  uuguug   g
cgc      ---   A      -     CG     --      aga 

Annotation confidence Not enough data

Comments

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context

9: 6606701-6606786 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from osa-MIR395u

Mature osa-miR395u-5p

• Accession: MIMAT0055930
• Description: Oryza sativa osa-miR395u-5p mature miRNA
• Sequence: 2 - CACUGCCAGGAAUUCCCUUCAAGCA - 26
• Evidence: experimental ; unknown

Mature osa-miR395u-3p

• Accession: MIMAT0000975
• Description: Oryza sativa osa-miR395u-3p mature miRNA
• Sequence: 56 - GUGAAGCGUUUGGGGGAAAUCUCA - 79
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638