Stem-loop osa-MIR159c

Accession

MI0001094

Description

Oryza sativa osa-MIR159c precursor miRNA

Literature search

76 open access papers mention osa-MIR159c
(331 sentences)

Sequence

756703 reads, 1693.0 reads per million, 142 experiments

gaggaggaagaggAGCUCCUUUCGAUCCAAUUCaggagaggaagugguaggaugcagcugccgauucauggauaccucuggagugcauggcagcaaugcuguaggccugcacuugcauggguuugcaugacccgggagaugaacccaccauugucuuccucuauugAUUGGAUUGAAGGGAGCUCCacaucucucuc
..((((((.(.((((((((((((((((((((.(((.((((((((((((.((...((.((.(((..(((((.(.((((.(((((((((.(((.(((....)))..)))))))))).)).)))).).)))))..))).)).))...))))))....)))))))).))))))))))))))))))))))).).)).)))).

Structure

ga    -  a a                    U   g        ----    a  aug  g  g   au     g u    c  -       u   -a   a 
  ggag ga g ggAGCUCCUUUCGAUCCAAU Cag agaggaag    uggu gg   ca cu ccg  ucaug a accu ug gagugca ggc  gca u
  |||| || | |||||||||||||||||||| ||| ||||||||    |||| ||   || || |||  ||||| | |||| || ||||||| |||  |||  
  ucuc cu c CCUCGAGGGAAGUUAGGUUA guu ucuccuuc    acca cc   gu ga ggc  aguac u uggg ac uucacgu ccg  ugu g
-c    u  a a                    -   a        uguu    -  caa  a  g   cc     g u    u  g       -   ga   c 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context

1: 6556048-6556244 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR159c

Mature osa-miR159c-5p

• Accession: MIMAT0055946
• Description: Oryza sativa osa-miR159c-5p mature miRNA
• Sequence: 14 - AGCUCCUUUCGAUCCAAUUC - 33
• Evidence: experimental ; unknown

Mature osa-miR159c-3p

• Accession: MIMAT0001024
• Description: Oryza sativa osa-miR159c-3p mature miRNA
• Sequence: 167 - AUUGGAUUGAAGGGAGCUCC - 186
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799