Stem-loop osa-MIR159e

Accession

MI0001096

Description

Oryza sativa osa-MIR159e precursor miRNA

Literature search

78 open access papers mention osa-MIR159e
(343 sentences)

Sequence

748324 reads, 1675.0 reads per million, 142 experiments

gaugaagaagaagagcucccuuucgauccaauucaggagaggaagugguaggaugcAGCUGCCGGUUCAUGGAUACCucuggagugcagggcaaauaguccuacccuuucauggguuugcaugacucgggagaugaacccgccauugucuuccucuauugaUUGGAUUGAAGGGAGCUCcucuagcuacau
.(((.((.(((.((((((((((.(((((((((.(((.((((((((((((.((...((.((.((((.(((((.(.((((.(((((...(((((.....)))))....))))).)))).).))))).)))).)).))...))))))....)))))))).)))))))))))))))))))))).)))..)).)))

Structure

g   a  -a   a          u         u   g        ----    a  aug  G  G    U     G U    c     -ugc     a 
 aug ag  aga gagcucccuu cgauccaau cag agaggaag    uggu gg   cA CU CCGG UCAUG A ACCu uggag    agggc a
 ||| ||  ||| |||||||||| ||||||||| ||| ||||||||    |||| ||   || || |||| ||||| | |||| |||||    ||||| a
 uac uc  ucu CUCGAGGGAA GUUAGGUUa guu ucuccuuc    accg cc   gu ga ggcu aguac u uggg acuuu    uccug u
-   a  ga   c          -         -   a        uguu    -  caa  a  g    c     g u    u     ccca     a 

Annotation confidence Low

Comments

This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context

1: 9760708-9760898 [-]

Mature osa-miR159e-5p

• Accession: MIMAT0061478
• Description: Oryza sativa osa-miR159e-5p mature miRNA
• Sequence: 57 - AGCUGCCGGUUCAUGGAUACC - 77
• Evidence: experimental ; unknown

Mature osa-miR438-5p

• Accession: MIMAT0001587
• Description: Oryza sativa osa-miR438-5p mature miRNA
• Sequence: 57 - AGCUGCCGGUUCAUGGAUACC - 77
• Evidence: experimental ; cloned [1]

Mature osa-miR159e-3p

• Accession: MIMAT0001026
• Description: Oryza sativa osa-miR159e-3p mature miRNA
• Sequence: 162 - UUGGAUUGAAGGGAGCUC - 179
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799