Stem-loop osa-MIR395i

Accession

MI0001033

Description

Oryza sativa osa-MIR395i precursor miRNA

Literature search

40 open access papers mention osa-MIR395i
(164 sentences)

Sequence

59606 reads, 279.0 reads per million, 142 experiments

guuuuaccgggaGUUCUCUUCAAGCACUUCACGuagagcuuucuauugacauggagcuuuagaacaauGUGAAGUGUUUGGGGGAACUCuugguaccaa
....((((((((((((.((((((((((((((((((((((..(((((....))))))))))......)))))))))))))))))))))))))))))....

Structure

guuu            U                 ------     uu     u 
    uaccgggaGUUC CUUCAAGCACUUCACGu      agagc  ucuau g
    |||||||||||| |||||||||||||||||      |||||  |||||  
    augguuCUCAAG GGGGUUUGUGAAGUGua      uuucg  aggua a
aacc            -                 acaaga     --     c 

Annotation confidence High

Comments

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context

8: 3299319-3299417 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from osa-MIR395i

Mature osa-miR395i-5p

• Accession: MIMAT0055922
• Description: Oryza sativa osa-miR395i-5p mature miRNA
• Sequence: 13 - GUUCUCUUCAAGCACUUCACG - 33
• Evidence: experimental ; unknown

Mature osa-miR395i-3p

• Accession: MIMAT0000964
• Description: Oryza sativa osa-miR395i-3p mature miRNA
• Sequence: 69 - GUGAAGUGUUUGGGGGAACUC - 89
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638