Stem-loop osa-MIR166f

Accession

MI0000675

Description

Oryza sativa osa-MIR166f precursor miRNA

Literature search

70 open access papers mention osa-MIR166f
(258 sentences)

Sequence

87002869 reads, 403577.0 reads per million, 142 experiments

cgaucaucuuguugagaGGAAUGUCGUCUGGCCUGAGAUcguaccacagugguggguacacguggacggucUCGGACCAGGCUUCAUUCCCCUcaacaacucgucgg
((((....((((((((.((((((..((((((.((((((((((.((((.(((.......))))))))))))))))).))))))..)))))).))))))))...)))).

Structure

-    cauc        a      UC      C          a    a   gu 
 cgau    uuguugag GGAAUG  GUCUGG CUGAGAUcgu ccac gug  g
 ||||    |||||||| ||||||  |||||| |||||||||| |||| |||  g
 gcug    aacaacUC CCUUAC  CGGACC GGCUcuggca ggug cac  g
g    -cuc        C      UU      A          -    -   au 

Annotation confidence High

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

10: 14483290-14483396 [-]

Mature osa-miR166f-5p

• Accession: MIMAT0055911
• Description: Oryza sativa osa-miR166f-5p mature miRNA
• Sequence: 18 - GGAAUGUCGUCUGGCCUGAGAU - 39
• Evidence: experimental ; unknown

Mature osa-miR166f-3p

• Accession: MIMAT0000640
• Description: Oryza sativa osa-miR166f-3p mature miRNA
• Sequence: 72 - UCGGACCAGGCUUCAUUCCCCU - 93
• Evidence: not_experimental

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626