Stem-loop osa-MIR156d

Accession

MI0000656

Description

Oryza sativa osa-MIR156d precursor miRNA

Literature search

121 open access papers mention osa-MIR156d
(701 sentences)

Sequence

13852520 reads, 51631.0 reads per million, 142 experiments

ggagaagcucucaugagaUUGACAGAAGAGAGUGAGCACAcggcgugauggccggcauaaaaucuaucccguccucgccgcguGCUCACUCCUCUUUCUGUCACCCUcuuucucucagggcucaacucc
((((.((((((...((((.((((((((((((((((((((.(((((.(((((..((........))...)))))..))))).))))))))).))).)))))))).......))))..))))))...))))

Structure

    --a      cau    ------U        -   -         A     -u     -cc  cau 
ggag   agcucu   gaga       UGACAGAA GAG AGUGAGCAC cggcg  gaugg   gg   a
||||   ||||||   ||||       |||||||| ||| ||||||||| |||||  |||||   ||    
ccuc   ucggga   cucu       ACUGUCUU CUC UCACUCGug gccgc  cugcc   uc   a
    aac      -cu    uucUCCC        U   C         c     uc     cua  uaa 

Annotation confidence High

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

2: 4512884-4513012 [-]

Mature osa-miR156d-5p

• Accession: MIMAT0000621
• Description: Oryza sativa osa-miR156d-5p mature miRNA
• Sequence: 19 - UUGACAGAAGAGAGUGAGCACA - 40
• Evidence: not_experimental

Mature osa-miR156d-3p

• Accession: MIMAT0055905
• Description: Oryza sativa osa-miR156d-3p mature miRNA
• Sequence: 84 - GCUCACUCCUCUUUCUGUCACCCU - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626