Stem-loop osa-MIR156d

Accession

MI0000656

Description

Oryza sativa osa-MIR156d precursor miRNA

Literature search

120 open access papers mention osa-MIR156d
(705 sentences)

Sequence

542760 reads, 375088 reads per million, 2 experiments

ggagaagcucucaugagauUGACAGAAGAGAGUGAGCACacggcgugauggccggcauaaaaucuaucccguccucgccgcgugcucacuccucuuucugucacccucuuucucucagggcucaacucc
((((.((((((...((((.((((((((((((((((((((.(((((.(((((..((........))...)))))..))))).))))))))).))).)))))))).......))))..))))))...))))

Structure

    --a      cau    ------u        -   -         a     -u     -cc  cau 
ggag   agcucu   gaga       UGACAGAA GAG AGUGAGCAC cggcg  gaugg   gg   a
||||   ||||||   ||||       |||||||| ||| ||||||||| |||||  |||||   ||    
ccuc   ucggga   cucu       acugucuu cuc ucacucgug gccgc  cugcc   uc   a
    aac      -cu    uucuccc        u   c         c     uc     cua  uaa 

Annotation confidence Not enough data

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

Chr2: 4512884-4513012 [-]

Mature osa-miR156d

• Accession: MIMAT0000621
• Description: Oryza sativa osa-miR156d mature miRNA
• Sequence: 20 - UGACAGAAGAGAGUGAGCAC - 39
• Evidence: not_experimental

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626