Stem-loop osa-MIR164b

Accession

MI0000669

Description

Oryza sativa osa-MIR164b precursor miRNA

Literature search

68 open access papers mention osa-MIR164b
(279 sentences)

Sequence

3547853 reads, 14648.0 reads per million, 142 experiments

gugcacggUGGAGAAGCAGGGCACGUGCAUuaccauccacucgccugccggccgccggccgccauugccauggaugguucuuCAUGUGCCCGUCUUCUCCACCgagcac
((((.(((((((((((..(((((((((....((((((((...((.((.(((((...))))).))..))..))))))))....)))))))))..))))))))))).))))

Structure

    a           CA         CAUu        cuc  -c  c     g 
gugc cggUGGAGAAG  GGGCACGUG    accaucca   gc  ug cggcc  
|||| |||||||||||  |||||||||    ||||||||   ||  || ||||| c
cacg gCCACCUCUUC  CCCGUGUAC    ugguaggu   cg  ac gccgg  
    a           UG         uucu        -ac  uu  c     c 

Annotation confidence High

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

5: 15896163-15896271 [-]

Mature osa-miR164b-5p

• Accession: MIMAT0000634
• Description: Oryza sativa osa-miR164b-5p mature miRNA
• Sequence: 9 - UGGAGAAGCAGGGCACGUGCAU - 30
• Evidence: not_experimental

Mature osa-miR164b-3p

• Accession: MIMAT0055910
• Description: Oryza sativa osa-miR164b-3p mature miRNA
• Sequence: 83 - CAUGUGCCCGUCUUCUCCACC - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626