Stem-loop osa-MIR395t

Accession

MI0001038

Description

Oryza sativa osa-MIR395t precursor miRNA

Literature search

40 open access papers mention osa-MIR395t
(167 sentences)

Sequence

149 reads, 2.0 reads per million, 48 experiments

uuauccacuggaguucuccucaaACCACUUCAGCAGAUAGCUAGCUAggccucauugcauugcaccacuguugcauaacuaugagcauggggccaaaaguuagcugcuuauaGUGAAGUGUUUGGGGAAACUCcgguuggcaa
....(((((((((((.(((((((((.((((((..((.(((((((((.((((((((.((..((((.......)))).........))))))))))...))))))))))).....))))))))))))))))))))))).)))...

Structure

uuau   -        c         C      ---GC  A         --A        u  -------au    cc 
    cca cuggaguu uccucaaAC ACUUCA     AG UAGCUAGCU   ggccucau gc         ugca  a
    ||| |||||||| ||||||||| ||||||     || |||||||||   |||||||| ||         ||||  c
    ggu ggcCUCAA AGGGGUUUG UGAAGU     uc gucgauuga   ccggggua cg         acgu  u
-aac   u        -         -      Gauau  -         aaa        -  aguaucaau    ug 

Annotation confidence Low

Comments

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context

9: 6607353-6607495 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from osa-MIR395t

Mature osa-miR395t-5p

• Accession: MIMAT0055926
• Description: Oryza sativa osa-miR395t-5p mature miRNA
• Sequence: 24 - ACCACUUCAGCAGAUAGCUAGCUA - 47
• Evidence: experimental ; unknown

Mature osa-miR395t-3p

• Accession: MIMAT0000969
• Description: Oryza sativa osa-miR395t-3p mature miRNA
• Sequence: 113 - GUGAAGUGUUUGGGGAAACUC - 133
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638