Stem-loop osa-MIR159b

Accession

MI0001093

Description

Oryza sativa osa-MIR159b precursor miRNA

Literature search

82 open access papers mention osa-MIR159b
(353 sentences)

Sequence

26137309 reads, 83314.0 reads per million, 142 experiments

gguuaugaagugGAGCUCCUUUCGUUCCAAUGAAAGGUUUAUCUGAAGGGUGAUACAGCUGCUUGUUCAUGGUUCCCAcuauucuaucucauaggaaaagagauaggcuuguggUUUGCAUGACCAAGGAGCCGAAUCAACUCCUUGCUGACCACUCUUUGGAUUGAAGGGAGCUCUGCaucuugauc
(((((.((.(((((((((((((((.(((((.((..((((......(((((((((.(.(((.((((.(((((....((((...((((((((.........))))))))...))))....))))).)))).))).).))).)).))))...))))..)).))))).))))))))))))))).)).)))))

Structure

     u  a               U     U  AA    UAUCUG    -  -   A A   G    U     GUUC    uau        aua 
gguua ga gugGAGCUCCUUUCG UCCAA GA  GGUU      AAGG GU GAU C GCU CUUG UCAUG    CCAc   ucuaucuc   g
||||| || ||||||||||||||| ||||| ||  ||||      |||| || ||| | ||| |||| |||||    ||||   ||||||||   g
cuagu cu CGUCUCGAGGGAAGU AGGUU CU  CCAG      UUCC CA CUA G CGA GAAC AGUAC    ggug   ggauagag   a
     u  a               U     U  CA    ---UCG    U  A   A C   G    C     GUUU    uuc        aaa 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context

1: 1215030-1215217 [+]

Mature osa-miR159b-5p.1

• Accession: MIMAT0055945
• Description: Oryza sativa osa-miR159b-5p.1 mature miRNA
• Sequence: 13 - GAGCUCCUUUCGUUCCAAUGA - 33
• Evidence: experimental ; unknown

Mature osa-miR159b-5p.2

• Accession: MIMAT0060838
• Description: Oryza sativa osa-miR159b-5p.2 mature miRNA
• Sequence: 34 - AAGGUUUAUCUGAAGGGUGAUAC - 56
• Evidence: experimental ; Illumina [1]

Mature osa-miR159b-5p.3

• Accession: MIMAT0060840
• Description: Oryza sativa osa-miR159b-5p.3 mature miRNA
• Sequence: 57 - AGCUGCUUGUUCAUGGUUCCCA - 78
• Evidence: experimental ; Illumina [1]

Mature osa-miR159b-3p.1

• Accession: MIMAT0001023
• Description: Oryza sativa osa-miR159b-3p.1 mature miRNA
• Sequence: 158 - UUUGGAUUGAAGGGAGCUCUGC - 179
• Evidence: experimental

Mature osa-miR159b-3p.2

• Accession: MIMAT0060839
• Description: Oryza sativa osa-miR159b-3p.2 mature miRNA
• Sequence: 136 - AUCAACUCCUUGCUGACCACUC - 157
• Evidence: experimental ; Illumina [1]

Mature osa-miR159b-3p.3

• Accession: MIMAT0060841
• Description: Oryza sativa osa-miR159b-3p.3 mature miRNA
• Sequence: 115 - UUUGCAUGACCAAGGAGCCGAA - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799