Stem-loop osa-MIR156i

Accession

MI0000661

Description

Oryza sativa osa-MIR156i precursor miRNA

Literature search

119 open access papers mention osa-MIR156i
(650 sentences)

Sequence

7817312 reads, 30320.0 reads per million, 142 experiments

ggUGACAGAAGAGAGUGAGCACAcggccgggcggaacggcaccggcggaugugccgucgcggccgcguGCUCACUGCUCUGUCUGUCAUC
((((((((((((((((((((((.((((((.(....(((((((........)))))))).)))))).))))))))).)))).)))))))))

Structure

         -    -         A      g cgga       cgg 
ggUGACAGA AGAG AGUGAGCAC cggccg g    acggcac   c
||||||||| |||| ||||||||| |||||| |    |||||||    
CUACUGUCU UCUC UCACUCGug gccggc c    ugccgug   g
         G    G         c      g ----       uag 

Annotation confidence High

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

2: 24119995-24120084 [-]

Mature osa-miR156i-5p

• Accession: MIMAT0000626
• Description: Oryza sativa osa-miR156i-5p mature miRNA
• Sequence: 3 - UGACAGAAGAGAGUGAGCACA - 23
• Evidence: not_experimental

Mature osa-miR156i-3p

• Accession: MIMAT0055907
• Description: Oryza sativa osa-miR156i-3p mature miRNA
• Sequence: 69 - GCUCACUGCUCUGUCUGUCAUC - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626