Stem-loop osa-MIR166e

Accession

MI0000674

Description

Oryza sativa osa-MIR166e precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

69 open access papers mention osa-MIR166e
(288 sentences)

Sequence

46 reads, 36 reads per million, 2 experiments

uguuucuggguGGAAUGUUGUCUGGUUCAAGGccccuuaggaugugugauuuuugaugguuuaugcauucaucuugaugcgaacaucuaucucggaucuuuggguucUCGAACCAGGCUUCAUUCCCCucagagaua
((((((((((.((((((..(((((((((.(((.(((..(((((.((.(((....((((.....((((((......))))))..)))).))).)).))))).))).))).)))))))))..)))))).))))))))))

Structure

          u      UU         A   c   uu     g  u   uuuu    guuua      ca 
uguuucuggg GGAAUG  GUCUGGUUC AGG ccc  aggau ug gau    gaug     ugcauu  u
|||||||||| ||||||  ||||||||| ||| |||  ||||| || |||    ||||     ||||||   
auagagacuC CCUUAC  CGGACCAAG Ucu ggg  uucua gc cua    cuac     gcguag  c
          C      UU         C   u   -u     g  u   ---u    ---aa      uu 

Annotation confidence Not enough data

Genome context

Chr3: 765724-765860 [+]

Mature osa-miR166e-3p

• Accession: MIMAT0000639
• Description: Oryza sativa osa-miR166e-3p mature miRNA
• Sequence: 108 - UCGAACCAGGCUUCAUUCCCC - 128
• Evidence: not_experimental

Mature osa-miR166e-5p

• Accession: MIMAT0022859
• Description: Oryza sativa osa-miR166e-5p mature miRNA
• Sequence: 12 - GGAAUGUUGUCUGGUUCAAGG - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176