Stem-loop osa-MIR444f

Accession

MI0006978

Description

Oryza sativa osa-MIR444f precursor miRNA

Literature search

23 open access papers mention osa-MIR444f
(63 sentences)

Sequence

388592 reads, 1809.0 reads per million, 142 experiments

augguggcaccaAGCAUGAGGUUACAACUGCAUuacuugcaagggaaucacaagucacaagaaacacauguuauuacaauggauaaucaaugggucaucauacuaugacuuucuugcaaguugUGCAGUUGUUGCCUCAAGCUUgcugccuccg
..((.((((.(((((.((((((.((((((((((.((((((((((((.(((..(((.....((..((...((((((......))))))...))..)).....))).))).)))))))))))).)))))))))).)))))).))))).)))).)).

Structure

au  u    c     A      U          u            a   ca   cacaa  aa  cau      ac 
  gg ggca caAGC UGAGGU ACAACUGCAU acuugcaaggga uca  agu     ga  ca   guuauu  a
  || |||| ||||| |||||| |||||||||| |||||||||||| |||  |||     ||  ||   ||||||   
  cc ccgu gUUCG ACUCCG UGUUGACGUg ugaacguucuuu agu  uca     cu  gu   uaauag  a
-g  u    c     A      U          u            c   -a   uacua  gg  aac      gu 

Annotation confidence High

Genome context

Unknown

Mature osa-miR444f-5p

• Accession: MIMAT0056030
• Description: Oryza sativa osa-miR444f-5p mature miRNA
• Sequence: 13 - AGCAUGAGGUUACAACUGCAU - 33
• Evidence: experimental ; unknown

Mature osa-miR444f-3p

• Accession: MIMAT0005976
• Description: Oryza sativa osa-miR444f-3p mature miRNA
• Sequence: 124 - UGCAGUUGUUGCCUCAAGCUU - 144
• Evidence: experimental ; MPSS [1], Northern [1], cloned [2]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25


2. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956