Stem-loop osa-MIR166m

Accession

MI0001157

Description

Oryza sativa osa-MIR166m precursor miRNA

Literature search

71 open access papers mention osa-MIR166m
(261 sentences)

Sequence

42362001 reads, 186738.0 reads per million, 142 experiments

cucugcuuuggugguuggcugauguucucgguuaagggguUUGUUGUCUGGUUCAAGGccuccugcuguccuacaucacauuuuuuuuucuuuguucugaauuucugauggaugugugugugcaugaugcauggcugguggugaccUCGGACCAGGCUUCAUUCCCuuuaaccagcauuugcguuaauaccaucaggcau
...(((((.((((((..((.((((((...((((((((((..((..(((((((((.(((((.((.(((....((((((.((((.....(((........))).....))))))))))...(((((...)))))))).)).))...))).)))))))))..))..)))))))))))))))).))......))))))))))).

Structure

cuc     u      ----ug  u      cuc          uU  UU         A   ---  u  u   ------------gucc      a    uuuuu   uuu 
   ugcuu gguggu      gc gauguu   gguuaagggg  UG  GUCUGGUUC AGG   cc cc gcu                uacauc cauu     uuc   g
   ||||| ||||||      || ||||||   ||||||||||  ||  ||||||||| |||   || || |||                |||||| ||||     |||    
   acgga cuacca      cg uuacga   ccaauuuCCC  AC  CGGACCAGG Ucc   gg gg cgg                guguag guag     aag   u
--u     -      uaauug  u      ---          UU  UU         C   agu  u  u   uacguaguacgugugu      -    ucuuu   ucu 

Annotation confidence High

Genome context

8: 23045356-23045555 [+]

Mature osa-miR166m-5p

• Accession: MIMAT0055976
• Description: Oryza sativa osa-miR166m-5p mature miRNA
• Sequence: 41 - UUGUUGUCUGGUUCAAGG - 58
• Evidence: experimental ; unknown

Mature osa-miR166m-3p

• Accession: MIMAT0001087
• Description: Oryza sativa osa-miR166m-3p mature miRNA
• Sequence: 147 - UCGGACCAGGCUUCAUUCCC - 166
• Evidence: not_experimental

References

1. PubMed ID: 15685364
   Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
   "Li Y, Li W, Jin YX"
   "Acta Biochim Biophys Sin (Shanghai) (2005) 37:75-87