Stem-loop osa-MIR1425

Accession

MI0006965

Description

Oryza sativa osa-MIR1425 precursor miRNA

Literature search

15 open access papers mention osa-MIR1425
(60 sentences)

Sequence

1695 reads, 1196 reads per million, 2 experiments

cuguugacugcauUAGGAUUCAAUCCUUGCUGCUaaauguauugcuuauauucagcaauauaauguucagCAGCAAGAACUGGAUCUUAAUauagucgauag
((((((((((.(((((((((((...(((((((((.(((((((((((.......))))))))...))).)))))))))...))))))))))).))))))))))

Structure

          c           AUC         a   ---        ua 
cuguugacug auUAGGAUUCA   CUUGCUGCU aau   guauugcu  u
|||||||||| |||||||||||   ||||||||| |||   ||||||||  a
gauagcugau UAAUUCUAGGU   GAACGACga uug   uauaacga  u
          a           CAA         c   uaa        cu 

Annotation confidence High

Genome context

Chr5: 8862149-8862250 [+]

Mature osa-miR1425-5p

• Accession: MIMAT0005959
• Description: Oryza sativa osa-miR1425-5p mature miRNA
• Sequence: 14 - UAGGAUUCAAUCCUUGCUGCU - 34
• Evidence: experimental ; MPSS [1], Northern [1], cloned [2-3]

Mature osa-miR1425-3p

• Accession: MIMAT0020933
• Description: Oryza sativa osa-miR1425-3p mature miRNA
• Sequence: 71 - CAGCAAGAACUGGAUCUUAAU - 91
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25


2. PubMed ID: 19055717
   Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice
   Lacombe S, Nagasaki H, Santi C, Duval D, Piégu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M
   BMC Plant Biol (2008) 8:123


3. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956


4. PubMed ID: 21791435
   Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)
   "Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q"
   "J Exp Bot (2011) 62:4943-4954