Stem-loop osa-MIR168a

Accession

MI0001115

Description

Oryza sativa osa-MIR168a precursor miRNA

Literature search

80 open access papers mention osa-MIR168a
(279 sentences)

Sequence

50009853 reads, 141844.0 reads per million, 142 experiments

cgccucgggcUCGCUUGGUGCAGAUCGGGACCcgccgccgccgcugccggggccggauCCCGCCUUGCACCAAGUGAAUCggagccg
((.(((.((.(((((((((((((..(((((.(((..(((.(((....))))))))).)))))..))))))))))))).)).))).))

Structure

  c   g  c             AU     C   cc   g   c 
cg cuc gg UCGCUUGGUGCAG  CGGGA Ccg  gcc ccg u
|| ||| || |||||||||||||  ||||| |||  ||| |||  
gc gag CU AGUGAACCACGUU  GCCCu ggc  cgg ggc g
  c   g  A             CC     a   --   -   c 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR168 family [1]. It is predicted to target mRNAs coding for the ARGONAUTE protein.

Genome context

2: 1553154-1553240 [-]

Mature osa-miR168a-5p

• Accession: MIMAT0001045
• Description: Oryza sativa osa-miR168a-5p mature miRNA
• Sequence: 11 - UCGCUUGGUGCAGAUCGGGACC - 32
• Evidence: experimental ; Illumina [2]

Mature osa-miR168a-3p

• Accession: MIMAT0015122
• Description: Oryza sativa osa-miR168a-3p mature miRNA
• Sequence: 59 - CCCGCCUUGCACCAAGUGAAUC - 80
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435