Stem-loop osa-MIR395s

Accession

MI0001037

Description

Oryza sativa osa-MIR395s precursor miRNA

Literature search

40 open access papers mention osa-MIR395s
(167 sentences)

Sequence

30 reads, 21 reads per million, 2 experiments

guaucaccgugaguucccuucaagcacuucacguggcacuauuucaaugccuauuGUGAAGUGUUUGGGGGAACUCucgauguucc
....((.((.(((((((((.(((((((((((((.((((.........))))...)))))))))))))))))))))).)).))....

Structure

guau  c  u         u             --u    cua 
    ca cg gaguucccu caagcacuucacg   ggca   u
    || || ||||||||| |||||||||||||   ||||   u
    gu gc CUCAAGGGG GUUUGUGAAGUGu   ccgu   u
ccuu  a  u         -             uau    aac 

Annotation confidence Not enough data

Comments

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context

Chr4: 32622943-32623028 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from osa-MIR395s

Mature osa-miR395s

• Accession: MIMAT0000968
• Description: Oryza sativa osa-miR395s mature miRNA
• Sequence: 56 - GUGAAGUGUUUGGGGGAACUC - 76
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638