Stem-loop osa-MIR156c

Accession

MI0000655

Description

Oryza sativa osa-MIR156c precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

120 open access papers mention osa-MIR156c
(656 sentences)

Sequence

373743 reads, 258287 reads per million, 2 experiments

ggaggaagagaggggugagaggugaggcUGACAGAAGAGAGUGAGCACacauggugacuuucuugcaugcugaauggacucaugcuugaagcuauguguGCUCACUUCUCUCUCUGUCAGCcauuugaucucucuuucucucuuucucc
(((((((((((((((.(((((((.(((((((((((((((((((((((((((((((....(((..(((((..(......).)))))..)))))))))))))))))).))))).))))))))))...).))))))))))))))))))))))

Structure

               u       g ---          -     -               gacu   uu     cu aa 
ggaggaagagagggg gagaggu a   ggcUGACAGA AGAGA GUGAGCACacauggu    uuc  gcaug  g  u
||||||||||||||| ||||||| |   |||||||||| ||||| |||||||||||||||    |||  |||||  |   
ccucuuucucucuuu cucucua u   cCGACUGUCU UCUCU CACUCGuguguaucg    aag  cguac  c  g
               -       g uua          C     U               ----   uu     -u ag 

Annotation confidence High

Genome context

Chr1: 4665975-4666123 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR156c

Mature osa-miR156c-5p

• Accession: MIMAT0000620
• Description: Oryza sativa osa-miR156c-5p mature miRNA
• Sequence: 29 - UGACAGAAGAGAGUGAGCAC - 48
• Evidence: not_experimental

Mature osa-miR156c-3p

• Accession: MIMAT0022846
• Description: Oryza sativa osa-miR156c-3p mature miRNA
• Sequence: 100 - GCUCACUUCUCUCUCUGUCAGC - 121
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176