Stem-loop osa-MIR820a

Accession

MI0005263

Description

Oryza sativa osa-MIR820a precursor miRNA

Literature search

14 open access papers mention osa-MIR820a
(228 sentences)

Sequence

2189 reads, 1517 reads per million, 2 experiments

ugcgUCGGCCUCGUGGAUGGACCAGgagcucaacauuccuuaagguuguucuuucaaacccauacaagguuccaccgccugcauuguuccaagagugucuuggaugaaaguaggaaguggaaccuuguuaggguuggaacgaacugccuuaaggaagucgaugcuccagguccguccaggaggacgacuca
((.((((.((((.((((((((((.(((((((.((.(((((((((((.((((.(((.(((((..((((((((((((..(((((.((..(((((((...)))))))..)).)))))..))))))))))))..))))).))).)))).))))))))))))).)).))))).)))))))))).)))).)))).))

Structure

  c    G    G          A     -  a  a           u    u   a     au            cg     a  gu       g 
ug gUCG CCUC UGGAUGGACC Ggagc uc ac uuccuuaaggu guuc uuc aaccc  acaagguuccac  ccugc uu  uccaaga  
|| |||| |||| |||||||||| ||||| || || ||||||||||| |||| ||| |||||  ||||||||||||  ||||| ||  ||||||| u
ac cagc ggag accugccugg ccucg ag ug aaggaauuccg caag aag uuggg  uguuccaaggug  ggaug aa  agguucu  
  u    a    g          a     u  c  -           u    c   g     au            aa     a  gu       g 

Annotation confidence Not enough data

Comments

miR820 was misnamed miR583 by Luo et al [1].

Genome context

Chr1: 14130479-14130669 [+]

Mature osa-miR820a

• Accession: MIMAT0004079
• Description: Oryza sativa osa-miR820a mature miRNA
• Sequence: 5 - UCGGCCUCGUGGAUGGACCAG - 25
• Evidence: experimental ; cloned [1], Northern [1-2], MPSS [2], Illumina [3]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956


3. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116