Accession
MI0001107
Description
Oryza sativa
osa-MIR166k precursor miRNA
Literature search
76 open access papers mention osa-MIR166k
(391 sentences)
(391 sentences)
Sequence
2810898
reads,
13596.0
reads per million, 142 experiments
auuagguuaaggGGUUUGUUGUCUGGCUCGAGGCauccgggacuccgguuucuccuuuccuacuggaggcgccuaauuuccggcgagcucggagccUCGGACCAGGCUUCAAUCCCUUuaaccaugc
....((((((((((.(((..((((((.(((((((.((((((.(((((((............))))))).((((........))))..))))))))))))).))))))..))).))))))))))....
....((((((((((.(((..((((((.(((((((.((((((.(((((((............))))))).((((........))))..))))))))))))).))))))..))).))))))))))....
Structure
auua U UU C a ------------------a uucuc
gguuaaggGG UUG GUCUGG UCGAGGC uccggg cuccggu c
|||||||||| ||| |||||| ||||||| |||||| |||||||
ccaauUUCCC AAC CGGACC GGCUccg aggcuc gagguca u
cgua U UU A - gagcggccuuuaauccgcg uccuu
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR166 family [1]. It is predicted to target mRNAs coding for HD-Zip transcription factors.
Genome context
2: 32435003-32435129 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR166k
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR166k-5p
| Accession | MIMAT0022870 |
| Description | Oryza sativa osa-miR166k-5p mature miRNA |
| Sequence | 13 - GGUUUGUUGUCUGGCUCGAGGC - 34 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
Mature osa-miR166k-3p
| Accession | MIMAT0001037 |
| Description | Oryza sativa osa-miR166k-3p mature miRNA |
| Sequence | 97 - UCGGACCAGGCUUCAAUCCCUU - 118 |
| Evidence | not_experimental |
| Database links |
|
References
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