Stem-loop osa-MIR166k

Accession

MI0001107

Description

Oryza sativa osa-MIR166k precursor miRNA

Literature search

74 open access papers mention osa-MIR166k
(411 sentences)

Sequence

2129 reads, 1473 reads per million, 2 experiments

auuagguuaaggGGUUUGUUGUCUGGCUCGAGGcauccgggacuccgguuucuccuuuccuacuggaggcgccuaauuuccggcgagcucggagccUCGGACCAGGCUUCAAUCCCUuuaaccaugc
....((((((((((.(((..((((((.(((((((.((((((.(((((((............))))))).((((........))))..))))))))))))).))))))..))).))))))))))....

Structure

auua          U   UU      C       a      ------------------a       uucuc 
    gguuaaggGG UUG  GUCUGG UCGAGGc uccggg                   cuccggu     c
    |||||||||| |||  |||||| ||||||| ||||||                   |||||||      
    ccaauuUCCC AAC  CGGACC GGCUccg aggcuc                   gagguca     u
cgua          U   UU      A       -      gagcggccuuuaauccgcg       uccuu 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR166 family [1]. It is predicted to target mRNAs coding for HD-Zip transcription factors.

Genome context

Chr2: 32435003-32435129 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR166k

Mature osa-miR166k-3p

• Accession: MIMAT0001037
• Description: Oryza sativa osa-miR166k-3p mature miRNA
• Sequence: 97 - UCGGACCAGGCUUCAAUCCCU - 117
• Evidence: not_experimental

Mature osa-miR166k-5p

• Accession: MIMAT0022870
• Description: Oryza sativa osa-miR166k-5p mature miRNA
• Sequence: 13 - GGUUUGUUGUCUGGCUCGAGG - 33
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176