Stem-loop osa-MIR395f

Accession

MI0001043

Description

Oryza sativa osa-MIR395f precursor miRNA

Literature search

41 open access papers mention osa-MIR395f
(170 sentences)

Sequence

678 reads, 4.0 reads per million, 93 experiments

uuaucgcggGUUCCCUUCAAUCACUUCACAUGGuacuauuucaaggccuacuauGUGAAUUGUUUGGGGGAACUCucgaugu
.(((((.(((((((((.(((.((.(((((((((((((......))...))))))))))).)).)))))))))))).))))).

Structure

u     c         U   U  C           ---  au 
 uaucg ggGUUCCCU CAA CA UUCACAUGGua   cu  u
 ||||| ||||||||| ||| || |||||||||||   ||   
 guagc CUCAAGGGG GUU GU AAGUGuaucau   ga  u
u     u         -   U  U           ccg  ac 

Annotation confidence Low

Comments

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context

4: 31804774-31804855 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from osa-MIR395f

Mature osa-miR395f-5p

• Accession: MIMAT0055929
• Description: Oryza sativa osa-miR395f-5p mature miRNA
• Sequence: 10 - GUUCCCUUCAAUCACUUCACAUGG - 33
• Evidence: experimental ; unknown

Mature osa-miR395f-3p

• Accession: MIMAT0000974
• Description: Oryza sativa osa-miR395f-3p mature miRNA
• Sequence: 55 - GUGAAUUGUUUGGGGGAACUC - 75
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638