Stem-loop osa-MIR1428c

Accession

MI0008237

Description

Oryza sativa osa-MIR1428c precursor miRNA

Literature search

5 open access papers mention osa-MIR1428c
(18 sentences)

Sequence

45978 reads, 250.0 reads per million, 118 experiments

gcuucaguaggUUAGUGCACUUUGCGAAUUCGCaggcccuauccugugguaugaacugaguacgcgauaauuuauggugcauauuaggggcuuaccauaagauaauGCCAUGAAUUCGCAAAGUGUUCaaacccacugaagu
((((((((.((((.(.((((((((((((((((..(((..((((.(((((((.(..((.(((((((.(((...))).)))..)))).))..).))))))).))))..))).)))))))))))))))).).)))).))))))))

Structure

        a    A U                Ca   cc    c       u aa  g    --   g   a 
gcuucagu ggUU G GCACUUUGCGAAUUCG  ggc  uauc uguggua g  cu agua  cgc aua  
|||||||| |||| | ||||||||||||||||  |||  |||| ||||||| |  || ||||  ||| ||| u
ugaaguca ccaa C UGUGAAACGCUUAAGU  CCG  auag auaccau c  gg uuau  gug uau  
        c    a U                -A   ua    a       u gg  a    ac   g   u 

Annotation confidence Low

Genome context

2: 2535020-2535161 [+]

Mature osa-miR1428c-5p

• Accession: MIMAT0056047
• Description: Oryza sativa osa-miR1428c-5p mature miRNA
• Sequence: 12 - UUAGUGCACUUUGCGAAUUCGC - 33
• Evidence: experimental ; unknown

Mature osa-miR1428c-3p

• Accession: MIMAT0007782
• Description: Oryza sativa osa-miR1428c-3p mature miRNA
• Sequence: 107 - GCCAUGAAUUCGCAAAGUGUUC - 128
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465