Stem-loop osa-MIR166i

Accession

MI0001144

Description

Oryza sativa osa-MIR166i precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

70 open access papers mention osa-MIR166i
(265 sentences)

Sequence

623 reads, 443 reads per million, 2 experiments

agauagguguuuggAAUGCAGUUUGAUCCAAGAUCugccuauauauaugguguguauaucauaucuugugauaugggggauaugcaacaggugugugacagggguagguagaucUCGGAUCAGGCUUCAUUCCUCacaccaauac
.....(((((..((((((.((((((((((.((((((((((((((((((....(((((((((((((....)))))....))))))))....)))))).......)))))))))))).)))))))))).))))))..))))).....

Structure

agaua     uu      C          A            -------      ggug        ----     u 
     ggugu  ggAAUG AGUUUGAUCC AGAUCugccuau       auauau    uguauauc    auauc u
     |||||  |||||| |||||||||| ||||||||||||       ||||||    ||||||||    |||||  
     ccaca  CCUUAC UCGGACUAGG Ucuagauggaug       ugugug    acguauag    uauag g
cauaa     CU      U          C            gggacag      gaca        gggg     u 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR166 family [1]. It is predicted to target mRNAs coding for HD-Zip transcription factors.

Genome context

Chr3: 25294953-25295097 [+]

Mature osa-miR166i-3p

• Accession: MIMAT0001074
• Description: Oryza sativa osa-miR166i-3p mature miRNA
• Sequence: 115 - UCGGAUCAGGCUUCAUUCCUC - 135
• Evidence: not_experimental

Mature osa-miR166i-5p

• Accession: MIMAT0022883
• Description: Oryza sativa osa-miR166i-5p mature miRNA
• Sequence: 15 - AAUGCAGUUUGAUCCAAGAUC - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176