Stem-loop osa-MIR164f

Accession

MI0001159

Description

Oryza sativa osa-MIR164f precursor miRNA

Literature search

69 open access papers mention osa-MIR164f
(278 sentences)

Sequence

3587550 reads, 14820.0 reads per million, 142 experiments

ugaggauggcgaggcgcgcgaggUGGAGAAGCAGGGCACGUGCAUuccuagagcuuccguccagcuccccggcgggcuagcuagcucacuccgccgccgccgccgccgccgccggcgcgcgcacggcuggcuggcuccggccggcugagaugcaugcacggaugCAUGUGCCCUUCUUCUCCACCgugcacgccucgccugcagcaagga
((..(..(((((((((.(((.((((((((((.(((((((((((((((.....((...(((((((((..((((..((((((((((((.....(((((((((.((....)).).))))).)))...))))))))))))))))..))))).))))...))..))))))))))))))).)))))))))).))).)))))))))..)..))....

Structure

----  ag au         c   a          C               cuaga  uuc    -     cc    cg            cacuc   -     - c  c 
    ug  g  ggcgaggcg gcg ggUGGAGAAG AGGGCACGUGCAUuc     gc   cguc cagcu  ccgg  ggcuagcuagcu     cgc cgccg c gc g
    ||  |  ||||||||| ||| |||||||||| |||||||||||||||     ||   |||| |||||  ||||  ||||||||||||     ||| ||||| | ||  
    ac  c  ccgcuccgc cgu CCACCUCUUC UCCCGUGUACguagg     cg   guag gucgg  ggcc  ucggucggucgg     gcg gcggc g cg c
agga  ga gu         a   g          U               ---ca  uac    a     cc    --            --cac   c     c c  c 

Annotation confidence High

Genome context

5: 23343908-23344117 [+]

Mature osa-miR164f-5p

• Accession: MIMAT0001089
• Description: Oryza sativa osa-miR164f-5p mature miRNA
• Sequence: 24 - UGGAGAAGCAGGGCACGUGCAU - 45
• Evidence: not_experimental

Mature osa-miR164f-3p

• Accession: MIMAT0055977
• Description: Oryza sativa osa-miR164f-3p mature miRNA
• Sequence: 165 - CAUGUGCCCUUCUUCUCCACC - 185
• Evidence: experimental ; unknown

References

1. PubMed ID: 15685364
   Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
   "Li Y, Li W, Jin YX"
   "Acta Biochim Biophys Sin (Shanghai) (2005) 37:75-87