Stem-loop osa-MIR169a

Accession

MI0000679

Description

Oryza sativa osa-MIR169a precursor miRNA

Literature search

70 open access papers mention osa-MIR169a
(404 sentences)

Sequence

320305 reads, 2033.0 reads per million, 142 experiments

cgccggcggccugacauugggAUCGGAGGCCAUGGUGCAGCCaaggaugacuugccgaucgaucgaucuaucuaugaagcuaagcuagcuggccauggauccauccaucaauuggcaaguuguucuuggCUACAUCUUGGCCCCUGCUCCUcauguaaggccggccuguggcg
((((((((((((.((((.((((.(((.(((((.((((.(((((((((((((((((((((.(((.(((..(((((((.(((((...)))))...)))))))..))).))).))))))))))))))))))))).)))).))))).))).)))).)))).))))).)))...))))

Structure

    ---   -     g    u    U   A     U    C                     c   c   cu       --a     a 
cgcc   ggc ggccu acau gggA CGG GGCCA GGUG AGCCaaggaugacuugccgau gau gau  aucuaug   agcua  
||||   ||| ||||| |||| |||| ||| ||||| |||| ||||||||||||||||||||| ||| |||  |||||||   ||||| g
gcgg   ccg ccgga ugua UCCU GUC CCGGU CUAC UCgguucuuguugaacgguua cua cua  uagguac   ucgau  
    ugu   g     a    c    C   C     U    A                     a   c   cc       cgg     c 

Annotation confidence Medium

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

1: 8729104-8729276 [+]

Mature osa-miR169a-5p

• Accession: MIMAT0000644
• Description: Oryza sativa osa-miR169a-5p mature miRNA
• Sequence: 22 - AUCGGAGGCCAUGGUGCAGCC - 42
• Evidence: not_experimental

Mature osa-miR169a-3p

• Accession: MIMAT0055913
• Description: Oryza sativa osa-miR169a-3p mature miRNA
• Sequence: 130 - CUACAUCUUGGCCCCUGCUCCU - 151
• Evidence: experimental ; unknown

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626