Stem-loop osa-MIR169a

Accession

MI0000679

Description

Oryza sativa osa-MIR169a precursor miRNA

Literature search

65 open access papers mention osa-MIR169a
(405 sentences)

Sequence

5612 reads, 3953 reads per million, 2 experiments

cgccggcggccugacauugggaucggaggccauggugCAGCCAAGGAUGACUUGCCGAucgaucgaucuaucuaugaagcuaagcuagcuggccauggauccauccaucaauuggcaaguuguucuuggcuacaucuuggccccugcuccucauguaaggccggccuguggcg
((((((((((((.((((.((((.(((.(((((.((((.(((((((((((((((((((((.(((.(((..(((((((.(((((...)))))...)))))))..))).))).))))))))))))))))))))).)))).))))).))).)))).)))).))))).)))...))))

Structure

    ---   -     g    u    u   a     u    C                     c   c   cu       --a     a 
cgcc   ggc ggccu acau ggga cgg ggcca ggug AGCCAAGGAUGACUUGCCGAu gau gau  aucuaug   agcua  
||||   ||| ||||| |||| |||| ||| ||||| |||| ||||||||||||||||||||| ||| |||  |||||||   ||||| g
gcgg   ccg ccgga ugua uccu guc ccggu cuac ucgguucuuguugaacgguua cua cua  uagguac   ucgau  
    ugu   g     a    c    c   c     u    a                     a   c   cc       cgg     c 

Annotation confidence Not enough data

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

Chr1: 8729104-8729276 [+]

Mature osa-miR169a

• Accession: MIMAT0000644
• Description: Oryza sativa osa-miR169a mature miRNA
• Sequence: 38 - CAGCCAAGGAUGACUUGCCGA - 58
• Evidence: not_experimental

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626