Stem-loop osa-MIR444d

Accession

MI0006976

Description

Oryza sativa osa-MIR444d precursor miRNA

Literature search

23 open access papers mention osa-MIR444d
(65 sentences)

Sequence

936522 reads, 4789.0 reads per million, 142 experiments

aguuauugcacaugguggcaccaAGCAUGAGGCAACAACUGCAUuacuugcaagaaaggcacaaaaucauuagaugauuacuuguggcuuucuugcaaguugUGCAGUUGCUGCCUCAAGCUUgcugccucccucugccaaau
.......(((...((.((((.(((((.(((((((.(((((((((.(((((((((((((.(((((((((((...))))))..))))).))))))))))))).))))))))).))))))).))))).)))).))...))).....

Structure

aguuauu   cau  u    c     A       A         u             g     --      u 
       gca   gg ggca caAGC UGAGGCA CAACUGCAU acuugcaagaaag cacaa  aaucau  
       |||   || |||| ||||| ||||||| ||||||||| ||||||||||||| |||||  |||||| a
       cgu   cc ccgu gUUCG ACUCCGU GUUGACGUg ugaacguucuuuc guguu  uuagua  
--uaaac   cuc  u    c     A       C         u             g     ca      g 

Annotation confidence Medium

Comments

Morin et al identify by high throughput sequencing a product offset from miR444d.3 by 3 nts, named miR444b in [3].

Genome context

Unknown

Mature osa-miR444d-5p

• Accession: MIMAT0005974
• Description: Oryza sativa osa-miR444d-5p mature miRNA
• Sequence: 24 - AGCAUGAGGCAACAACUGCAU - 44
• Evidence: experimental ; MPSS [1], Northern [1]

Mature osa-miR444d-3p

• Accession: MIMAT0005973
• Description: Oryza sativa osa-miR444d-3p mature miRNA
• Sequence: 103 - UGCAGUUGCUGCCUCAAGCUU - 123
• Evidence: experimental ; MPSS [1], Northern [1]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25


2. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956


3. PubMed ID: 18323537
   Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
   "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
   "Genome Res (2008) 18:571-584