Stem-loop osa-MIR395b

Accession

MI0001028

Description

Oryza sativa osa-MIR395b precursor miRNA

Literature search

43 open access papers mention osa-MIR395b
(169 sentences)

Sequence

58382 reads, 280.0 reads per million, 142 experiments

gagucccuaggaguuccuuucaagcacuuuACGACACACUGUAUUGAGAGUUGUCgUGAAGUGUUUGGGGGAACUCuuagugucgc
..(.(.(((((((((((((.((((((((((((((((.(((........)))))))))))))))))))))))))))))))).).)..

Structure

ga u c             u                C   GUA 
  g c cuaggaguuccuu caagcacuuuACGACA ACU   U
  | | ||||||||||||| |||||||||||||||| |||    
  c g gauuCUCAAGGGG GUUUGUGAAGUgCUGU UGA   U
cg u u             -                -   GAG 

Annotation confidence Medium

Comments

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context

4: 31805334-31805419 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from osa-MIR395b

Mature osa-miR395b-5p

• Accession: MIMAT0061477
• Description: Oryza sativa osa-miR395b-5p mature miRNA
• Sequence: 31 - ACGACACACUGUAUUGAGAGUUGUC - 55
• Evidence: experimental ; unknown

Mature osa-miR395b-3p

• Accession: MIMAT0000959
• Description: Oryza sativa osa-miR395b-3p mature miRNA
• Sequence: 57 - UGAAGUGUUUGGGGGAACUC - 76
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638