Stem-loop osa-MIR1428e

Accession

MI0008239

Description

Oryza sativa osa-MIR1428e precursor miRNA

Literature search

7 open access papers mention osa-MIR1428e
(50 sentences)

Sequence

5 reads, 3 reads per million, 2 experiments

gcgcuuggcgAAUUCACAGGCCCUAUCUUGUGguaugaacuggguacgcgaugauuugcacugcguauugggggcuuaccaUAAGAUAAUGCCAUGAAUUUGucaagcgu
((((((((((((((((..(((..((((((((((((.(..((.((((((((.((.....)).)))))))).))..).))))))))))))..))).))))))))))))))))

Structure

                CA   CC            u aa  g        a  a 
gcgcuuggcgAAUUCA  GGC  UAUCUUGUGgua g  cu gguacgcg ug u
||||||||||||||||  |||  |||||||||||| |  || |||||||| || u
ugcgaacuGUUUAAGU  CCG  AUAGAAUaccau c  gg uuaugcgu ac u
                -A   UA            u gg  g        c  g 

Annotation confidence Not enough data

Genome context

Chr3: 23076870-23076979 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1428e

Mature osa-miR1428e-5p

• Accession: MIMAT0007784
• Description: Oryza sativa osa-miR1428e-5p mature miRNA
• Sequence: 11 - AAUUCACAGGCCCUAUCUUGUG - 32
• Evidence: experimental ; 454 [1], Illumina [3]

Mature osa-miR1428e-3p

• Accession: MIMAT0007785
• Description: Oryza sativa osa-miR1428e-3p mature miRNA
• Sequence: 82 - UAAGAUAAUGCCAUGAAUUUG - 102
• Evidence: experimental ; 454 [1], cloned [2]

References

1. PubMed ID: 19055717
   Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice
   Lacombe S, Nagasaki H, Santi C, Duval D, Piégu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M
   BMC Plant Biol (2008) 8:123


2. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465


3. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930